PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kalax.0496s0003.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family ERF
Protein Properties Length: 108aa    MW: 11873.7 Da    PI: 11.7534
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kalax.0496s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-173079154
                  AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkle 54
                         ++++G+r ++ +gr++A Ird ++    ++r++lg+f++ e A +a++aa+++l+
  Kalax.0496s0003.1.p 30 PKFRGIRKRP-WGRFAAKIRDpWK----KTRVWLGTFDSVEAATRAYDAAARSLR 79
                         79********.**********883....5***********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.03E-153088No hitNo description
PfamPF008479.0E-113079IPR001471AP2/ERF domain
PROSITE profilePS5103220.5743188IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-193189IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.8E-273188IPR001471AP2/ERF domain
SMARTSM003801.2E-283194IPR001471AP2/ERF domain
PRINTSPR003674.3E-93243IPR001471AP2/ERF domain
PRINTSPR003674.3E-95470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MGKVRGGATA AASLGNQVKD APLEIGSAEP KFRGIRKRPW GRFAAKIRDP WKKTRVWLGT  60
FDSVEAATRA YDAAARSLRC PKVRTNFPTP PSSSIVFIFH RVAFEPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-163293668ATERF1
3gcc_A4e-163293668ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095450.13e-32PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803395e-29ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A0D2U4L52e-30A0A0D2U4L5_G
TrEMBLV5N3R82e-30V5N3R8_G
STRINGGSMUA_Achr4P06660_0014e-29(Musa acuminata)
STRINGPGSC0003DMT4000574431e-28(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50640.14e-24ethylene responsive element binding factor 3